SNP Profiles matching POUND 2/A [POU]

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 Key

 1234567891011121314
_Input profile
CCAACCTTTTAATTTTCCAAAGCCGGTT
1._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
2._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
3._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
4._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
5._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
6._POUND_2_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
7._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
8._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
9._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
10._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
11._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
12._GC-01-093-5-10
CCAACCTTTTAATTTTCCAAAGCCGGTT
13._POUND_25_/A
CCAACCTTTTAATTTTCCAAAGCCGGTT
14._MARPER_28
CCAACCTT-AATT-CCAAAG-GGTT
15._RUQ_1504
_AACCTT___TT___CCAG_
16._RUQ_877
_AACCTT___TT___CCGG_
17._MARPER_38
CCAACGTT-AATT-CCAAAG-GGTT
18._RUQ_897
_AACGTT___TT___CCGG_
19._RUQ_1588
_AACGTT___TT___CCAG_
20._RUQ_1334
_AACCTT___TT___CCGG_
21._RUQ_515
_AACGTT___TT___CCAG_
22._RUQ_468
_AAGGTT___TT___CCGG_
23._NA_286
CCAAGGTTTTAATTTTCCAAAACCGGTT
24._GC-01-101-5-18
CCAAGGTTTTAATTTTCCAAAACCGGTT
25._NA_286
CCAAGGTTTTAATT_CCAAAACCGGTT
26._GC-01-101-5-18
CCAAGGTTTTAATT_CCAAAACCGGTT
27._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
28._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
29._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
30._POUND_5_/C
CCAAGGTTTT_TTTTCCAAGGCCGGTT
31._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
32._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
33._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
34._GC-08-165-4-08
CCAAGGTTTT_TTTTCCAAGGCCGGTT
35._MARPER_16
CC-CCTTTTAATTTTCC-AACCGGTT
36._NA_286
CCAAGGTTTTACTTTTCCAAAACCGGTT
37._RUQ_801
_AAGGTT___TT___CCGG_
38._RUQ_1587
_AAGGTT___TT___CCGG_
39._POUND_5_/C
CCAAGGTTTTCCTTTTCCAAGGCCGGTT
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCAAGGGGTTCCAA
1._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
2._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
3._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
4._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
5._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
6._POUND_2_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
7._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
8._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
9._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
10._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
11._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
12._GC-01-093-5-10
AAGGCCCCGGGGAACCAAGGGGTTCCAA
13._POUND_25_/A
AAGGCCCCGGGGAACCAAGGGGTTCCAA
14._MARPER_28
AAGG-CC-GGAACC-GG-TTCCAA
15._RUQ_1504
___CCGGGG_CCAAGGGGTTCCAA
16._RUQ_877
___CCCGGG_CCAAGGGG-CCAA
17._MARPER_38
AAGG-CC-GGAACC-GG-CTCCAA
18._RUQ_897
___CCGGGG_CCAAGGGGCTCCAA
19._RUQ_1588
___CCGGGG_CCAAGGGGTTCCAA
20._RUQ_1334
___CCCGGG_CCAAGGGGTTCCAA
21._RUQ_515
___CCGGGG_CCAAGGGGTTCCAA
22._RUQ_468
___CCGGGG_CCAAGGGGCTCCAA
23._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
24._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
25._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
26._GC-01-101-5-18
AAGGCCCCGGGGAACCAAGGGGCCCCAA
27._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
28._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
29._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
30._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
31._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
32._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
33._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
34._GC-08-165-4-08
AAGGCCCCGGGGAACCAAGGGGCTCCAA
35._MARPER_16
AAGGCCCCCCGGAACCAAGGGGTTCCAA
36._NA_286
AAGGCCCCGGGGAACCAAGGGGCCCCAA
37._RUQ_801
___CCGGGG_CCAAGGGGCCCCAA
38._RUQ_1587
___CCGGGG_CCAAGGGGCCCCAA
39._POUND_5_/C
AAGGCCCCGGGGAACCAAGGGGCTCCAA
 29303132333435363738    
_Input profile
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
1._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
2._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
3._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
4._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
5._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
6._POUND_2_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
7._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
8._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
9._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
10._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
11._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
12._GC-01-093-5-10
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
13._POUND_25_/A
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
14._MARPER_28
GG-CCAA--GG-TT-X_XX_XX_XX_X
15._RUQ_1504
_AACCAAAACCGGCC__X_XX_XX_XX_X
16._RUQ_877
_AACCAAAACCGGCC__X_XX_XX_XX_X
17._MARPER_38
GG-CCAA--GG-TT-X_XX_XX_XX_X
18._RUQ_897
_AACCAAAACCGGCC__X_XX_XX_XX_X
19._RUQ_1588
_AACCAAAACCGGCC__X_XX_XX_XX_X
20._RUQ_1334
_AACCAGAACCGGCC__X_XX_XX_XX_X
21._RUQ_515
_AACCAGAACCGGCC__X_XX_XX_XX_X
22._RUQ_468
_AACCAAAACCGGCC__X_XX_XX_XX_X
23._NA_286
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
24._GC-01-101-5-18
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
25._NA_286
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
26._GC-01-101-5-18
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
27._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
28._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
29._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
30._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
31._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
32._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
33._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
34._GC-08-165-4-08
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X
35._MARPER_16
GGAACCGGAACCGGCCTTGGX_XX_XX_XX_X
36._NA_286
GGAACCAAAACCGGCCTTGGX_XX_XX_XX_X
37._RUQ_801
_AACCAAAACCGGCC__X_XX_XX_XX_X
38._RUQ_1587
_AACCAAAACCGGCC__X_XX_XX_XX_X
39._POUND_5_/C
GGAACCAGAACCGGCCTTGGX_XX_XX_XX_X

Input profile: POUND_2_/A

 
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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

1._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

3._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

4._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

5._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

6._POUND_2_/A

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

10._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

11._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

12._POUND_2_/A GC-01-093-5-10

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

13._POUND_25_/A

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

14._MARPER_28

identical
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

15._NA_232 RUQ_1504

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._CRU_100 RUQ_877

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._MARPER_38

96.2 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

18._CRU_70 RUQ_897

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._NA_710 RUQ_1588

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_916 RUQ_1334

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_27 RUQ_515

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_756 RUQ_468

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_286

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

24._NA_286 GC-01-101-5-18

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

25._NA_286

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

26._NA_286 GC-01-101-5-18

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

27._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

29._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

30._POUND_5_/C

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

31._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

34._POUND_5_/C GC-08-165-4-08

93.2 %
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

35._MARPER_16

93.1 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 750A
 Dapeng Zhang, 2014

36._NA_286

92.1 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

37._NA_149 RUQ_801

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._NA_702 RUQ_1587

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

39._POUND_5_/C

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25